PH01000364G0750's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G27710 : 8.50E-98
Blast annotation: -
2.Location
Scaffold: PH01000364
Strand: +
| Region | Start | End |
| gene | 488512 | 492653 |
| mRNA | 488512 | 492653 |
| exon | 488512 | 489708 |
| exon | 491088 | 491165 |
| exon | 491247 | 491389 |
| exon | 491802 | 491872 |
| exon | 491969 | 492064 |
| exon | 492222 | 492314 |
| exon | 492408 | 492653 |
| CDS | 489601 | 489708 |
| CDS | 491088 | 491165 |
| CDS | 491247 | 491389 |
| CDS | 491802 | 491872 |
| CDS | 491969 | 492064 |
| CDS | 492222 | 492314 |
| CDS | 492408 | 492490 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000485 | Ascorbate_and_aldarate_metabolism Amino_sugar_and_nucleotide_sugar_metabolism cellular metabolic process, coenzyme binding, ARF Transcription_Regulator(from PlantTFDB) B3-ARF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.