PH01000364G1020's details annotation
1.Annotation
ICBR annotation: 60S ribosomal protein L22-2, putative, expressed
Blast result AT3G05560 : 1.70E-40
Blast annotation: Ribosomal L22e protein family
2.Location
Scaffold: PH01000364
Strand: +
| Region | Start | End |
| gene | 674516 | 675876 |
| mRNA | 674516 | 675876 |
| exon | 674516 | 674874 |
| exon | 675732 | 675876 |
| CDS | 674627 | 674874 |
| CDS | 675732 | 675876 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000166 | Ribosome translation, Ribosome structural constituent of ribosome, intracellular, mitochondrial envelope, cytochrome-c oxidase activity, polysaccharide_binding ubiquitin thiolesterase activity, Oxidative_phosphorylation ubiquitin-dependent protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01776.16 | Ribosomal_L22e | 20 | 128 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L22e | ko03011 | K02891 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.