PH01000365G0370's details annotation
1.Annotation
ICBR annotation: ribosomal protein S6, putative, expressed
Blast result AT1G64510 : 4.90E-44
Blast annotation: Translation elongation factor EF1B/ribosomal protein S6 family protein
2.Location
Scaffold: PH01000365
Strand: +
| Region | Start | End |
| gene | 284825 | 288624 |
| mRNA | 284825 | 288624 |
| exon | 284825 | 285328 |
| exon | 287792 | 288624 |
| CDS | 284948 | 285328 |
| CDS | 287792 | 288037 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | phe-miR160c | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01250.16 | Ribosomal_S6 | 102 | 201 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
| GO:0019843 | rRNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.