PH01000365G0880's details annotation
1.Annotation
ICBR annotation: AMP-binding enzyme, putative, expressed
Blast result AT3G23790 : 0.00E+00
Blast annotation: AMP-dependent synthetase and ligase family protein
2.Location
Scaffold: PH01000365
Strand: -
| Region | Start | End |
| gene | 565521 | 575632 |
| mRNA | 565521 | 575632 |
| exon | 565521 | 566180 |
| exon | 566274 | 566331 |
| exon | 566702 | 566844 |
| exon | 567132 | 567211 |
| exon | 567477 | 567636 |
| exon | 568180 | 568317 |
| exon | 568430 | 568477 |
| exon | 568663 | 568707 |
| exon | 569106 | 569186 |
| exon | 569258 | 569311 |
| exon | 569449 | 569607 |
| exon | 569838 | 569943 |
| exon | 570301 | 570368 |
| exon | 570454 | 570603 |
| exon | 570876 | 570994 |
| exon | 571676 | 571887 |
| exon | 573955 | 574067 |
| exon | 574992 | 575632 |
| CDS | 566088 | 566180 |
| CDS | 566274 | 566331 |
| CDS | 566702 | 566844 |
| CDS | 567132 | 567211 |
| CDS | 567477 | 567636 |
| CDS | 568180 | 568317 |
| CDS | 568430 | 568477 |
| CDS | 568663 | 568707 |
| CDS | 569106 | 569186 |
| CDS | 569258 | 569311 |
| CDS | 569449 | 569607 |
| CDS | 569838 | 569943 |
| CDS | 570301 | 570368 |
| CDS | 570454 | 570603 |
| CDS | 570876 | 570994 |
| CDS | 571676 | 571887 |
| CDS | 573955 | 574067 |
| CDS | 574992 | 575117 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000920 | Nicotinate_and_nicotinamide_metabolism Fatty_acid_metabolism inositol tetrakisphosphate 1-kinase activity, inositol-1,3,4-trisphosphate_5-kinase_activity inositol-1,3,4-trisphosphate_6-kinase_activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, Peroxisome inositol trisphosphate metabolic process, nitrogen compound metabolic process, antiporter activity, drug transmembrane transporter activity, |
| coexpression network | CFinderM000923 | Nicotinate_and_nicotinamide_metabolism proton-transporting two-sector ATPase complex, catalytic domain, NAD+ synthase (glutamine-hydrolyzing) activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, ATP metabolic process, NAD biosynthetic process, nitrogen compound metabolic process, proton transport, drug transmembrane transport, ATP hydrolysis coupled proton transport, drug transmembrane transporter activity, antiporter activity, Fatty_acid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00501.27 | AMP-binding | 144 | 524 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Fatty acid metabolism | long-chain acyl-CoA synthetase [EC:6.2.1.3] | ko01212 | K01897 |
| Peroxisome | long-chain acyl-CoA synthetase [EC:6.2.1.3] | ko04146 | K01897 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.