Annotation of co-expression genes

PH01000366G0610's details annotation

1.Annotation

ICBR annotation: hydrolase, NUDIX family, domain containing protein, expressed

Blast result AT5G47650 : 7.70E-85
Blast annotation: nudix hydrolase homolog 2

2.Location

Scaffold: PH01000366
Strand: -

RegionStartEnd
gene401811412112
mRNA401811412112
exon401811402879
exon403479403680
exon404091404372
exon404547404662
exon405287405647
exon406189406352
exon407126407331
exon407469407577
exon408137408271
exon409023409057
exon409160409210
exon409299409376
exon409514409651
exon409982410047
exon410725412112
CDS402291402879
CDS403479403680
CDS404091404372
CDS404547404662
CDS405287405647
CDS406189406352
CDS407126407331
CDS407469407577
CDS408137408271
CDS409023409057
CDS409160409210
CDS409299409376
CDS409514409651
CDS409982410047
CDS410725410886

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00293.27NUDIX108274
PF08284.10RVP_2768867

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016787hydrolase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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