PH01000367G0560's details annotation
1.Annotation
ICBR annotation: chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed
Blast result AT3G23070 : 3.00E-150
Blast annotation: CRM family member 3A
2.Location
Scaffold: PH01000367
Strand: -
| Region | Start | End |
| gene | 405456 | 412971 |
| mRNA | 405456 | 412971 |
| exon | 405456 | 405977 |
| exon | 406070 | 406159 |
| exon | 406243 | 406302 |
| exon | 406538 | 406830 |
| exon | 407082 | 407238 |
| exon | 407653 | 408000 |
| exon | 409521 | 409651 |
| exon | 409862 | 410175 |
| exon | 410870 | 410919 |
| exon | 411091 | 411208 |
| exon | 412332 | 412971 |
| CDS | 405570 | 405977 |
| CDS | 406070 | 406159 |
| CDS | 406243 | 406302 |
| CDS | 406538 | 406830 |
| CDS | 407082 | 407238 |
| CDS | 407653 | 408000 |
| CDS | 409521 | 409651 |
| CDS | 409862 | 410175 |
| CDS | 410870 | 410919 |
| CDS | 411091 | 411208 |
| CDS | 412332 | 412825 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01985.20 | CRS1_YhbY | 321 | 388 |
| PF01985.20 | CRS1_YhbY | 517 | 603 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.