PH01000367G0710's details annotation
1.Annotation
ICBR annotation: transporter family protein, putative, expressed
Blast result AT5G61520 : 7.00E-141
Blast annotation: Major facilitator superfamily protein
2.Location
Scaffold: PH01000367
Strand: +
| Region | Start | End |
| gene | 532676 | 534920 |
| mRNA | 532676 | 534920 |
| exon | 532676 | 533183 |
| exon | 533285 | 533592 |
| exon | 533729 | 534920 |
| CDS | 533048 | 533183 |
| CDS | 533285 | 533592 |
| CDS | 533729 | 534802 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000576 | RNA_degradation |
| coexpression network | CFinderM000642 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00083.23 | Sugar_tr | 28 | 483 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0006810 | transport |
| GO:0016020 | membrane |
| GO:0016021 | integral to membrane |
| GO:0022857 | transmembrane transporter activity |
| GO:0022891 | substrate-specific transmembrane transporter activity |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.