PH01000367G0850's details annotation
1.Annotation
ICBR annotation: PAP fibrillin family domain containing protein, expressed
Blast result AT3G23400 : 1.60E-78
Blast annotation: Plastid-lipid associated protein PAP / fibrillin family protein
2.Location
Scaffold: PH01000367
Strand: +
| Region | Start | End |
| gene | 590213 | 593213 |
| mRNA | 590213 | 593213 |
| exon | 590213 | 591786 |
| exon | 591881 | 592120 |
| exon | 592229 | 592355 |
| exon | 592611 | 593213 |
| CDS | 591529 | 591786 |
| CDS | 591881 | 592120 |
| CDS | 592229 | 592355 |
| CDS | 592611 | 592825 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000981 | alternative_oxidase_activity Arachidonic_acid_metabolism Metabolism_of_xenobiotics_by_cytochrome_P450 chloroplast, structural molecule activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04755.11 | PAP_fibrillin | 80 | 276 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005198 | structural molecule activity |
| GO:0009507 | chloroplast |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.