PH01000367G1100's details annotation
1.Annotation
ICBR annotation: PHD-finger domain containing protein, putative, expressed
Blast result AT2G19260 : 2.40E-25
Blast annotation: RING/FYVE/PHD zinc finger superfamily protein
2.Location
Scaffold: PH01000367
Strand: +
| Region | Start | End |
| gene | 743568 | 749766 |
| mRNA | 743568 | 749766 |
| exon | 743568 | 743752 |
| exon | 745402 | 745486 |
| exon | 745976 | 746940 |
| exon | 748058 | 748118 |
| exon | 748191 | 748303 |
| exon | 748497 | 748570 |
| exon | 748899 | 748961 |
| exon | 749001 | 749091 |
| exon | 749659 | 749766 |
| CDS | 743742 | 743752 |
| CDS | 745402 | 745486 |
| CDS | 745976 | 746940 |
| CDS | 748058 | 748118 |
| CDS | 748191 | 748303 |
| CDS | 748497 | 748570 |
| CDS | 748899 | 748961 |
| CDS | 749001 | 749091 |
| CDS | 749659 | 749710 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000092 | HSF Transcription_Regulator(from PlantTFDB) metal ion transport, nucleus, PHD Transcription_Regulator(from iTAK) CAMK_CDPK (from iTAK) |
| coexpression network | CFinderM000435 | PHD Transcription_Regulator(from iTAK) HSF Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000611 | WNK_NRBP (from iTAK) PHD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001822 | protein processing, PHD Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | PHD |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00628.28 | PHD | 244 | 290 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.