Annotation of co-expression genes

PH01000370G0330's details annotation

1.Annotation

ICBR annotation: serine/threonine-protein kinase, putative, expressed

Blast result AT1G01540 : 7.00E-119
Blast annotation: Protein kinase superfamily protein

2.Location

Scaffold: PH01000370
Strand: +

RegionStartEnd
gene169476176677
mRNA169476176677
exon169476169677
exon171484172004
exon172727172791
exon173000173104
exon173189173311
exon174169174339
exon174422174551
exon174653174862
exon174946176677
CDS169593169677
CDS171484172004
CDS172727172791
CDS173000173104
CDS173189173311
CDS174169174339
CDS174422174551
CDS174653174862
CDS174946175050

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07714.16Pkinase_Tyr226461

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.