Annotation of co-expression genes

PH01000370G0640's details annotation

1.Annotation

ICBR annotation: CAMK_KIN1/SNF1/Nim1_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed

Blast result AT1G01140 : 6.00E-138
Blast annotation: CBL-interacting protein kinase 9

2.Location

Scaffold: PH01000370
Strand: -

RegionStartEnd
gene352055356315
mRNA352055356315
exon352055352328
exon352957353033
exon353150353224
exon353569353685
exon354005354115
exon354466354588
exon354770354859
exon355107355232
exon355323355376
exon355621355701
exon355813355920
exon356242356315
CDS352232352328
CDS352957353033
CDS353150353224
CDS353569353685
CDS354005354115
CDS354466354588
CDS354770354859
CDS355107355232
CDS355323355376
CDS355621355701
CDS355813355920
CDS356242356283

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase15180
PF03822.13NAF219280

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0007165signal transduction
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.