PH01000371G0320's details annotation
1.Annotation
ICBR annotation: ankyrin repeat domain containing protein, expressed
Blast result AT4G35450 : 4.00E-106
Blast annotation: ankyrin repeat-containing protein 2
2.Location
Scaffold: PH01000371
Strand: +
| Region | Start | End |
| gene | 228311 | 230675 |
| mRNA | 228311 | 230675 |
| exon | 228311 | 228782 |
| exon | 229096 | 229457 |
| exon | 229536 | 229707 |
| exon | 229867 | 229959 |
| exon | 230076 | 230215 |
| exon | 230311 | 230675 |
| CDS | 228609 | 228782 |
| CDS | 229096 | 229457 |
| CDS | 229536 | 229707 |
| CDS | 229867 | 229959 |
| CDS | 230076 | 230215 |
| CDS | 230311 | 230410 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000845 | iron-sulfur cluster assembly, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12796.6 | Ank_2 | 241 | 323 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.