PH01000371G0350's details annotation
1.Annotation
ICBR annotation: pantoate--beta-alanine ligase, putative, expressed
Blast result AT5G48840 : 7.60E-31
Blast annotation: homolog of bacterial PANC
2.Location
Scaffold: PH01000371
Strand: +
| Region | Start | End |
| gene | 241173 | 244883 |
| mRNA | 241173 | 244883 |
| exon | 241173 | 242017 |
| exon | 242870 | 242983 |
| exon | 243224 | 243355 |
| exon | 243763 | 243843 |
| exon | 244184 | 244883 |
| CDS | 241697 | 242017 |
| CDS | 242870 | 242983 |
| CDS | 243224 | 243355 |
| CDS | 243763 | 243843 |
| CDS | 244184 | 244246 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000479 | pantothenate biosynthetic process, pantoate-beta-alanine ligase activity, Rab GDP-dissociation inhibitor activity, beta-Alanine_metabolism Pantothenate_and_CoA_biosynthesis protein transport, |
| coexpression network | CFinderM001013 | malate dehydrogenase (NADP+) activity, pantoate-beta-alanine ligase activity, pantothenate biosynthetic process, malate dehydrogenase activity, malate metabolic process, oxidoreductase activity, Pantothenate_and_CoA_biosynthesis beta-Alanine_metabolism Pyruvate_metabolism Carbon_fixation_in_photosynthetic_organisms Amino_sugar_and_nucleotide_sugar_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02569.14 | Pantoate_ligase | 9 | 103 |
| PF02569.14 | Pantoate_ligase | 108 | 216 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| beta-Alanine metabolism | pantoate--beta-alanine ligase [EC:6.3.2.1] | ko00410 | K01918 |
| Pantothenate and CoA biosynthesis | pantoate--beta-alanine ligase [EC:6.3.2.1] | ko00770 | K01918 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004592 | pantoate-beta-alanine ligase activity |
| GO:0015940 | pantothenate biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.