PH01000371G0770's details annotation
1.Annotation
ICBR annotation: phenazine biosynthesis protein, putative, expressed
Blast result AT4G02860 : 6.30E-36
Blast annotation: Phenazine biosynthesis PhzC/PhzF protein
2.Location
Scaffold: PH01000371
Strand: -
| Region | Start | End |
| gene | 497446 | 500456 |
| mRNA | 497446 | 500456 |
| exon | 497446 | 497681 |
| exon | 497823 | 497906 |
| exon | 498407 | 498709 |
| exon | 499107 | 499223 |
| exon | 499333 | 499548 |
| exon | 499714 | 500456 |
| CDS | 497574 | 497681 |
| CDS | 497823 | 497906 |
| CDS | 498407 | 498709 |
| CDS | 499107 | 499223 |
| CDS | 499333 | 499548 |
| CDS | 499714 | 500070 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000239 | cullin-RING ubiquitin ligase complex, glycogen_phosphorylase_activity protein_binding,_bridging actin filament binding, phosphatidylserine biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02567.15 | PhzC-PhzF | 31 | 195 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0009058 | biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.