PH01000373G0800's details annotation
1.Annotation
ICBR annotation: POEI14 - Pollen Ole e I allergen and extensin family protein precursor, expressed
Blast result AT4G38760 : 3.90E-25
Blast annotation: Protein of unknown function (DUF3414)
2.Location
Scaffold: PH01000373
Strand: +
| Region | Start | End |
| gene | 640030 | 645427 |
| mRNA | 640030 | 645427 |
| exon | 640030 | 640849 |
| exon | 643468 | 643640 |
| exon | 644245 | 644439 |
| exon | 644719 | 644962 |
| exon | 645245 | 645427 |
| CDS | 640844 | 640849 |
| CDS | 643468 | 643640 |
| CDS | 644245 | 644439 |
| CDS | 644719 | 644962 |
| CDS | 645245 | 645370 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001399 | RNA_transport Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, Base_excision_repair |
| coexpression network | CFinderM001767 | RLK-Pelle_PERK-1 (from iTAK) RNA methylation, nucleoside transmembrane transporter activity, carboxyl- or carbamoyltransferase activity, RNA methyltransferase activity, O-methyltransferase activity, RNA_transport cellular amino acid metabolic process, amino acid binding, |
| coexpression network | CFinderM001779 | pseudouridine synthesis, RNA modification, RNA binding, binding, pseudouridine synthase activity, |
| coexpression network | CFinderM001861 | SNARE_interactions_in_vesicular_transport acid-amino acid ligase activity, Ubiquitin_mediated_proteolysis mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.