PH01000374G0780's details annotation
1.Annotation
ICBR annotation: MYB family transcription factor, putative, expressed
Blast result AT5G02320 : 1.10E-74
Blast annotation: myb domain protein 3r-5
2.Location
Scaffold: PH01000374
Strand: +
| Region | Start | End |
| gene | 492336 | 497457 |
| mRNA | 492336 | 497457 |
| exon | 492336 | 493819 |
| exon | 494057 | 494132 |
| exon | 494225 | 494328 |
| exon | 494758 | 494886 |
| exon | 495569 | 497457 |
| CDS | 493806 | 493819 |
| CDS | 494057 | 494132 |
| CDS | 494225 | 494328 |
| CDS | 494758 | 494886 |
| CDS | 495569 | 496775 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000866 | Regulation_of_autophagy autophagy, protein metabolic process, IWS1 Transcription_Regulator(from iTAK) transcription, DNA-dependent, MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB |
| Transcription_Regulator(from PlantTFDB) | MYB |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 24 | 70 |
| PF00249.30 | Myb_DNA-binding | 76 | 119 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.