PH01000374G1150's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G03380 : 5.20E-98
Blast annotation: homolog of yeast autophagy 18 (ATG18) G
2.Location
Scaffold: PH01000374
Strand: -
| Region | Start | End |
| gene | 742315 | 745609 |
| mRNA | 742315 | 745609 |
| exon | 742315 | 742701 |
| exon | 743023 | 743195 |
| exon | 743318 | 743628 |
| exon | 744090 | 744150 |
| exon | 744303 | 744482 |
| exon | 744596 | 745030 |
| exon | 745139 | 745609 |
| CDS | 742689 | 742701 |
| CDS | 743023 | 743195 |
| CDS | 743318 | 743628 |
| CDS | 744090 | 744150 |
| CDS | 744303 | 744482 |
| CDS | 744596 | 745030 |
| CDS | 745139 | 745438 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000786 | TKL_CTR1-DRK-2 (from iTAK) ATP phosphoribosyltransferase activity, histidine biosynthetic process, RNA-dependent DNA replication, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12490.7 | BCAS3 | 324 | 472 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.