PH01000375G0060's details annotation
1.Annotation
ICBR annotation: trehalase precursor, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000375
Strand: +
| Region | Start | End |
| gene | 84084 | 88523 |
| mRNA | 84084 | 88523 |
| exon | 84084 | 85221 |
| exon | 86405 | 86485 |
| exon | 86540 | 86665 |
| exon | 86770 | 86892 |
| exon | 87776 | 88523 |
| CDS | 84451 | 85221 |
| CDS | 86405 | 86485 |
| CDS | 86540 | 86665 |
| CDS | 86770 | 86892 |
| CDS | 87776 | 87928 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Jumonji |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02375.16 | JmjN | 29 | 61 |
| PF01204.17 | Trehalase | 112 | 204 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004555 | alpha,alpha-trehalase activity |
| GO:0005991 | trehalose metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.