PH01000376G0230's details annotation
1.Annotation
ICBR annotation: 4Fe-4S binding domain containing protein, expressed
Blast result AT1G79010 : 4.50E-90
Blast annotation: Alpha-helical ferredoxin
2.Location
Scaffold: PH01000376
Strand: -
| Region | Start | End |
| gene | 186309 | 190762 |
| mRNA | 186309 | 190762 |
| exon | 186309 | 186697 |
| exon | 186778 | 186889 |
| exon | 186998 | 187065 |
| exon | 187686 | 187799 |
| exon | 187890 | 187975 |
| exon | 188092 | 188145 |
| exon | 189490 | 189571 |
| exon | 189711 | 190762 |
| CDS | 186602 | 186697 |
| CDS | 186778 | 186889 |
| CDS | 186998 | 187065 |
| CDS | 187686 | 187799 |
| CDS | 187890 | 187975 |
| CDS | 188092 | 188145 |
| CDS | 189490 | 189571 |
| CDS | 189711 | 189764 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001198 | RLK-Pelle_RLCK-VI (from iTAK) Oxidative_phosphorylation |
| coexpression network | CFinderM001358 | spliceosomal complex, nuclear mRNA splicing, via spliceosome, |
| coexpression network | CFinderM001405 | transcription factor TFIIF complex, transcription initiation from RNA polymerase II promoter, Basal_transcription_factors Endocytosis Oxidative_phosphorylation protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12838.6 | Fer4_7 | 121 | 175 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | NADH dehydrogenase (ubiquinone) Fe-S protein 8 [EC:1.6.5.3;EC:1.6.99.3] | ko00190 | K03941 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009055 | electron carrier activity |
| GO:0016020 | membrane |
| GO:0016491 | oxidoreductase activity |
| GO:0016651 | oxidoreductase activity, acting on NAD(P)H |
| GO:0051536 | iron-sulfur cluster binding |
| GO:0051539 | 4 iron, 4 sulfur cluster binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.