Annotation of co-expression genes

PH01000377G0310's details annotation

1.Annotation

ICBR annotation: protein phosphatase 2C, putative, expressed

Blast result AT4G38520 : 3.00E-141
Blast annotation: Protein phosphatase 2C family protein

2.Location

Scaffold: PH01000377
Strand: +

RegionStartEnd
gene229533235578
mRNA229533235578
exon229533231582
exon232066232433
exon233273233509
exon234554235578
CDS231411231582
CDS232066232433
CDS233273233509
CDS234554234802

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00481.20PP2C19275

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004722protein serine/threonine phosphatase activity
GO:0006470protein dephosphorylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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