Annotation of co-expression genes

PH01000377G0350's details annotation

1.Annotation

ICBR annotation: glycosyl hydrolases family 16, putative, expressed

Blast result AT3G44990 : 8.00E-105
Blast annotation: xyloglucan endo-transglycosylase-related 8

2.Location

Scaffold: PH01000377
Strand: -

RegionStartEnd
gene281934284177
mRNA281934284177
exon281934282321
exon283386283603
exon283683283783
exon283915284177
CDS281967282321
CDS283386283603
CDS283683283783
CDS283915284128

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Glycoside_HydrolasesGH16

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00722.20Glyco_hydro_1642226
PF06955.11XET_C259295

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005618cell wall
GO:0005975carbohydrate metabolic process
GO:0006073cellular glucan metabolic process
GO:0016762xyloglucan:xyloglucosyl transferase activity
GO:0048046apoplast

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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