Gene details

Annotation of co-expression genes

PH01000377G0810's details annotation

1.Annotation

ICBR annotation: tetratricopeptide repeat domain containing protein, expressed

Blast result AT1G76630 : 0.00E+00
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein

2.Location

Scaffold: PH01000377
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001014	SET Transcription_Regulator(from iTAK) endoplasmic reticulum, nucleus, ubiquitin ligase complex, histone_methylation
coexpression network	CFinderM001101	SET Transcription_Regulator(from iTAK) histone_methylation histone_lysine_methylation Lysine_degradation nucleus, ubiquitin ligase complex, histone-lysine N-methyltransferase activity, histone_binding RNA_degradation transcription, DNA-dependent, protein ubiquitination,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
RNA degradation	superkiller protein 3	ko03018	K12600

10.Gene Ontology

GO Accession	GO Annotation
GO:0000151	ubiquitin ligase complex
GO:0004842	ubiquitin-protein ligase activity
GO:0005515	protein binding
GO:0016567	protein ubiquitination

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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