Annotation of co-expression genes

PH01000377G0860's details annotation

1.Annotation

ICBR annotation: protein kinase, putative, expressed

Blast result AT2G45910 : 5.00E-167
Blast annotation: U-box domain-containing protein kinase family protein

2.Location

Scaffold: PH01000377
Strand: -

RegionStartEnd
gene578944586814
mRNA578944586814
exon578944579911
exon580753581517
exon581605582153
exon582229582369
exon582445582871
exon583105583209
exon583302583423
exon583522583643
exon584280586814
CDS579696579911
CDS580753581517
CDS581605582153
CDS582229582369
CDS582445582871
CDS583105583209
CDS583302583423
CDS583522583643
CDS584280584589

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000492SCY1_SCYL1 (from iTAK)
RLK-Pelle_RLCK-IXb (from iTAK)
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
protein binding,
protein phosphatase type 2A complex,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase551753
PF04564.14U-box838908

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000151ubiquitin ligase complex
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0004842ubiquitin-protein ligase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016567protein ubiquitination
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.