PH01000378G0590's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G47860 : 7.00E-159
Blast annotation: Protein of unknown function (DUF1350)
2.Location
Scaffold: PH01000378
Strand: +
| Region | Start | End |
| gene | 371989 | 380867 |
| mRNA | 371989 | 380867 |
| exon | 371989 | 372234 |
| exon | 372319 | 372388 |
| exon | 372469 | 372593 |
| exon | 375289 | 375397 |
| exon | 375468 | 375531 |
| exon | 375660 | 375715 |
| exon | 376355 | 376462 |
| exon | 378102 | 378135 |
| exon | 378358 | 378536 |
| exon | 380235 | 380405 |
| exon | 380559 | 380867 |
| CDS | 372044 | 372234 |
| CDS | 372319 | 372388 |
| CDS | 372469 | 372593 |
| CDS | 375289 | 375397 |
| CDS | 375468 | 375531 |
| CDS | 375660 | 375715 |
| CDS | 376355 | 376462 |
| CDS | 378102 | 378135 |
| CDS | 378358 | 378536 |
| CDS | 380235 | 380405 |
| CDS | 380559 | 380792 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000482 | translation release factor activity, translation release factor activity, codon specific, translational termination, translational initiation, translation initiation factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07082.10 | DUF1350 | 82 | 227 |
| PF07082.10 | DUF1350 | 278 | 370 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.