PH01000379G0790's details annotation
1.Annotation
ICBR annotation: S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed
Blast result AT3G02470 : 8.10E-96
Blast annotation: S-adenosylmethionine decarboxylase
2.Location
Scaffold: PH01000379
Strand: +
| Region | Start | End |
| gene | 567282 | 571333 |
| mRNA | 567282 | 571333 |
| exon | 567282 | 571333 |
| CDS | 569153 | 570331 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01536.15 | SAM_decarbox | 18 | 344 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Cysteine and methionine metabolism | S-adenosylmethionine decarboxylase [EC:4.1.1.50] | ko00270 | K01611 |
| Arginine and proline metabolism | S-adenosylmethionine decarboxylase [EC:4.1.1.50] | ko00330 | K01611 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004014 | adenosylmethionine decarboxylase activity |
| GO:0006597 | spermine biosynthetic process |
| GO:0008295 | spermidine biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.