PH01000379G0890's details annotation
1.Annotation
ICBR annotation: AP2 domain containing protein, expressed
Blast result AT1G16060 : 8.00E-88
Blast annotation: ARIA-interacting double AP2 domain protein
2.Location
Scaffold: PH01000379
Strand: -
| Region | Start | End |
| gene | 643089 | 648331 |
| mRNA | 643089 | 648331 |
| exon | 643089 | 643817 |
| exon | 645481 | 645557 |
| exon | 645668 | 645718 |
| exon | 645889 | 645962 |
| exon | 646705 | 646793 |
| exon | 647068 | 647150 |
| exon | 647251 | 648331 |
| CDS | 643216 | 643817 |
| CDS | 645481 | 645557 |
| CDS | 645668 | 645718 |
| CDS | 645889 | 645962 |
| CDS | 646705 | 646793 |
| CDS | 647068 | 647150 |
| CDS | 647251 | 647435 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | AP2/ERF-AP2 |
| Transcription_Regulator(from PlantTFDB) | AP2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00847.19 | AP2 | 55 | 111 |
| PF00847.19 | AP2 | 154 | 205 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.