PH01000382G0520's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G09812 : 3.10E-14
Blast annotation: -
2.Location
Scaffold: PH01000382
Strand: +
| Region | Start | End |
| gene | 340312 | 343305 |
| mRNA | 340312 | 343305 |
| exon | 340312 | 340753 |
| exon | 340963 | 341067 |
| exon | 341954 | 342040 |
| exon | 342585 | 343305 |
| CDS | 340406 | 340753 |
| CDS | 340963 | 341067 |
| CDS | 341954 | 342040 |
| CDS | 342585 | 342920 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000640 | GH17 Glycoside_Hydrolases negative regulation of catalytic activity, nucleobase-containing compound metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.