PH01000382G1060's details annotation
1.Annotation
ICBR annotation: beta-galactosidase 7 precursor, putative, expressed
Blast result AT1G77410 : 3.00E-148
Blast annotation: beta-galactosidase 16
2.Location
Scaffold: PH01000382
Strand: -
| Region | Start | End |
| gene | 713733 | 720453 |
| mRNA | 713733 | 720453 |
| exon | 713733 | 714104 |
| exon | 714321 | 714630 |
| exon | 714741 | 714886 |
| exon | 714977 | 715084 |
| exon | 715597 | 715709 |
| exon | 715958 | 716055 |
| exon | 716167 | 716351 |
| exon | 716703 | 716821 |
| exon | 716919 | 717003 |
| exon | 717239 | 717357 |
| exon | 717455 | 717539 |
| exon | 718006 | 718149 |
| exon | 718232 | 718324 |
| exon | 718410 | 718476 |
| exon | 718642 | 718754 |
| exon | 718863 | 718958 |
| exon | 719289 | 719369 |
| exon | 719710 | 720453 |
| CDS | 714015 | 714104 |
| CDS | 714321 | 714630 |
| CDS | 714741 | 714886 |
| CDS | 714977 | 715084 |
| CDS | 715597 | 715709 |
| CDS | 715958 | 716055 |
| CDS | 716167 | 716351 |
| CDS | 716703 | 716821 |
| CDS | 716919 | 717003 |
| CDS | 717239 | 717357 |
| CDS | 717455 | 717539 |
| CDS | 718006 | 718149 |
| CDS | 718232 | 718324 |
| CDS | 718410 | 718476 |
| CDS | 718642 | 718754 |
| CDS | 718863 | 718958 |
| CDS | 719289 | 719369 |
| CDS | 719710 | 719955 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH35 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01301.18 | Glyco_hydro_35 | 108 | 278 |
| PF01301.18 | Glyco_hydro_35 | 281 | 325 |
| PF01301.18 | Glyco_hydro_35 | 349 | 393 |
| PF13364.5 | BetaGal_dom4_5 | 581 | 656 |
| PF02140.17 | Gal_Lectin | 694 | 746 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.