PH01000384G0220's details annotation
1.Annotation
ICBR annotation: cleft lip and palate transmembrane protein 1, putative, expressed
Blast result AT5G08500 : 0.00E+00
Blast annotation: Transmembrane CLPTM1 family protein
2.Location
Scaffold: PH01000384
Strand: +
| Region | Start | End |
| gene | 145074 | 153030 |
| mRNA | 145074 | 153030 |
| exon | 145074 | 145394 |
| exon | 146932 | 147078 |
| exon | 147160 | 147274 |
| exon | 147360 | 147451 |
| exon | 147546 | 147643 |
| exon | 148605 | 148896 |
| exon | 149152 | 149245 |
| exon | 149351 | 149541 |
| exon | 150076 | 150295 |
| exon | 150394 | 150561 |
| exon | 150680 | 153030 |
| CDS | 145185 | 145394 |
| CDS | 146932 | 147078 |
| CDS | 147160 | 147274 |
| CDS | 147360 | 147451 |
| CDS | 147546 | 147643 |
| CDS | 148605 | 148896 |
| CDS | 149152 | 149245 |
| CDS | 149351 | 149541 |
| CDS | 150076 | 150295 |
| CDS | 150394 | 150561 |
| CDS | 150680 | 150879 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05602.11 | CLPTM1 | 34 | 459 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.