PH01000384G0540's details annotation
1.Annotation
ICBR annotation: GLTP domain containing protein, putative, expressed
Blast result AT3G21260 : 2.40E-46
Blast annotation: Glycolipid transfer protein (GLTP) family protein
2.Location
Scaffold: PH01000384
Strand: +
| Region | Start | End |
| gene | 383558 | 389411 |
| mRNA | 383558 | 389411 |
| exon | 383558 | 385216 |
| exon | 385561 | 385616 |
| exon | 387289 | 387419 |
| exon | 387562 | 387700 |
| exon | 387798 | 389411 |
| CDS | 384964 | 385216 |
| CDS | 385561 | 385616 |
| CDS | 387289 | 387419 |
| CDS | 387562 | 387700 |
| CDS | 387798 | 387962 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000662 | isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, glycolipid transport, Terpenoid_backbone_biosynthesis glycopeptide_alpha-N-acetylgalactosaminidase_activity glycolipid binding, glycolipid transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08718.10 | GLTP | 70 | 209 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005737 | cytoplasm |
| GO:0017089 | glycolipid transporter activity |
| GO:0046836 | glycolipid transport |
| GO:0051861 | glycolipid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.