PH01000384G0920's details annotation
1.Annotation
ICBR annotation: Regulator of chromosome condensation domain containing protein, expressed
Blast result AT5G63860 : 1.10E-71
Blast annotation: Regulator of chromosome condensation (RCC1) family protein
2.Location
Scaffold: PH01000384
Strand: -
| Region | Start | End |
| gene | 633211 | 638111 |
| mRNA | 633211 | 638111 |
| exon | 633211 | 633702 |
| exon | 633835 | 633887 |
| exon | 633974 | 634059 |
| exon | 634190 | 634308 |
| exon | 634470 | 634541 |
| exon | 634745 | 634888 |
| exon | 635293 | 635466 |
| exon | 636263 | 636418 |
| exon | 637406 | 638111 |
| CDS | 633610 | 633702 |
| CDS | 633835 | 633887 |
| CDS | 633974 | 634059 |
| CDS | 634190 | 634308 |
| CDS | 634470 | 634541 |
| CDS | 634745 | 634888 |
| CDS | 635293 | 635466 |
| CDS | 636263 | 636418 |
| CDS | 637406 | 637915 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00415.17 | RCC1 | 3 | 51 |
| PF00415.17 | RCC1 | 54 | 102 |
| PF00415.17 | RCC1 | 106 | 147 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.