PH01000385G0250's details annotation
1.Annotation
ICBR annotation: ribosomal protein, putative, expressed
Blast result AT5G59240 : 2.20E-96
Blast annotation: Ribosomal protein S8e family protein
2.Location
Scaffold: PH01000385
Strand: +
| Region | Start | End |
| gene | 164970 | 170804 |
| mRNA | 164970 | 170804 |
| exon | 164970 | 166569 |
| exon | 166715 | 166787 |
| exon | 167647 | 167980 |
| exon | 168517 | 168692 |
| exon | 169055 | 170804 |
| CDS | 166566 | 166569 |
| CDS | 166715 | 166787 |
| CDS | 167647 | 167980 |
| CDS | 168517 | 168692 |
| CDS | 169055 | 169133 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01201.21 | Ribosomal_S8e | 1 | 199 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S8e | ko03011 | K02995 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.