PH01000386G0280's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT5G16750 : 0.00E+00
Blast annotation: Transducin family protein / WD-40 repeat family protein
2.Location
Scaffold: PH01000386
Strand: -
| Region | Start | End |
| gene | 147859 | 155967 |
| mRNA | 147859 | 155967 |
| exon | 147859 | 149707 |
| exon | 149792 | 149966 |
| exon | 150036 | 150166 |
| exon | 150314 | 150402 |
| exon | 150518 | 150641 |
| exon | 151142 | 151218 |
| exon | 151303 | 151549 |
| exon | 151638 | 151794 |
| exon | 152432 | 152550 |
| exon | 152685 | 152819 |
| exon | 152903 | 153188 |
| exon | 153277 | 153482 |
| exon | 154033 | 154182 |
| exon | 154490 | 154567 |
| exon | 155150 | 155967 |
| CDS | 149363 | 149707 |
| CDS | 149792 | 149966 |
| CDS | 150036 | 150166 |
| CDS | 150314 | 150402 |
| CDS | 150518 | 150641 |
| CDS | 151142 | 151218 |
| CDS | 151303 | 151549 |
| CDS | 151638 | 151794 |
| CDS | 152432 | 152550 |
| CDS | 152685 | 152819 |
| CDS | 152903 | 153188 |
| CDS | 153277 | 153482 |
| CDS | 154033 | 154182 |
| CDS | 154490 | 154567 |
| CDS | 155150 | 155473 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 70 | 97 |
| PF00400.31 | WD40 | 102 | 148 |
| PF00400.31 | WD40 | 153 | 190 |
| PF00400.31 | WD40 | 358 | 398 |
| PF00400.31 | WD40 | 403 | 441 |
| PF00400.31 | WD40 | 462 | 493 |
| PF00400.31 | WD40 | 502 | 534 |
| PF00400.31 | WD40 | 539 | 576 |
| PF08625.10 | Utp13 | 672 | 805 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome biogenesis in eukaryotes | U3 small nucleolar RNA-associated protein 13 | ko03008 | K14555 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0006364 | rRNA processing |
| GO:0032040 | small-subunit processome |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.