PH01000387G0170's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G53620 : 1.20E-75
Blast annotation: -
2.Location
Scaffold: PH01000387
Strand: -
| Region | Start | End |
| gene | 194746 | 199622 |
| mRNA | 194746 | 199622 |
| exon | 194746 | 195385 |
| exon | 195463 | 195561 |
| exon | 195666 | 195959 |
| exon | 196047 | 196169 |
| exon | 196256 | 196456 |
| exon | 196550 | 196765 |
| exon | 197036 | 197269 |
| exon | 197416 | 197586 |
| exon | 198939 | 198991 |
| exon | 199076 | 199622 |
| CDS | 194873 | 195385 |
| CDS | 195463 | 195561 |
| CDS | 195666 | 195959 |
| CDS | 196047 | 196169 |
| CDS | 196256 | 196456 |
| CDS | 196550 | 196765 |
| CDS | 197036 | 197269 |
| CDS | 197416 | 197586 |
| CDS | 198939 | 198991 |
| CDS | 199076 | 199178 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001028 | peptide-methionine_(R)-S-oxide_reductase_activity metallopeptidase activity, Ubiquitin_mediated_proteolysis acid-amino acid ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.