PH01000387G0600's details annotation
1.Annotation
ICBR annotation: protein transport protein Sec61 subunit alpha, putative, expressed
Blast result AT2G34250 : 0
Blast annotation: SecY protein transport family protein
2.Location
Scaffold: PH01000387
Strand: -
| Region | Start | End |
| gene | 539513 | 542229 |
| mRNA | 539513 | 542229 |
| exon | 539513 | 539832 |
| exon | 540315 | 540450 |
| exon | 540561 | 540685 |
| exon | 540783 | 541137 |
| exon | 541219 | 541446 |
| exon | 541640 | 542229 |
| CDS | 539593 | 539832 |
| CDS | 540315 | 540450 |
| CDS | 540561 | 540685 |
| CDS | 540783 | 541137 |
| CDS | 541219 | 541446 |
| CDS | 541640 | 541983 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10559.8 | Plug_translocon | 42 | 76 |
| PF00344.19 | SecY | 77 | 458 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein export | protein transport protein SEC61 subunit alpha | ko03060 | K10956 |
| Protein processing in endoplasmic reticulum | protein transport protein SEC61 subunit alpha | ko04141 | K10956 |
| Phagosome | protein transport protein SEC61 subunit alpha | ko04145 | K10956 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015031 | protein transport |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.