Annotation of co-expression genes

PH01000388G0600's details annotation

1.Annotation

ICBR annotation: FAD dependent oxidoreductase domain containing protein, expressed

Blast result AT3G10370 : 0.00E+00
Blast annotation: FAD-dependent oxidoreductase family protein

2.Location

Scaffold: PH01000388
Strand: -

RegionStartEnd
gene512461522137
mRNA512461522137
exon512461513783
exon515046515304
exon515691515851
exon516797517128
exon517665518138
exon519235519317
exon519484519675
exon520154520229
exon521128521202
exon521430522137
CDS513442513783
CDS515046515304
CDS515691515851
CDS516797517128
CDS517665518138
CDS519235519317
CDS519484519675
CDS520154520229
CDS521128521202
CDS521430521793

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000810CAMTA Transcription_Regulator(from PlantTFDB)
glycerol-3-phosphate dehydrogenase complex,
Valine,_leucine_and_isoleucine_degradation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings

Created with Highcharts 4.1.6Expression value (FPKM)gene expression profiling among different tissue samplesleaf_SRR2035212leaf_SRR2035327leaf_SRR4450543_CKleaf_SRR4450545_Dehydrationleaf_SRR4450547_Dehydrationleaf_SRR4450549_Coldleaf_SRR4450551_ColdLeaf-2Leaf_ERR105068Root_1Root_3Root_5Root_ERR105075RhizomeRhizome_ERR105074culm_SRR1187864shoot_SAM_Ashoot_MIN_Cshoot_YNO_Ashoot_YNO_Cshoot_MNO_Ashoot_MNO_Cshoot_SAM_Cshoot_YIN_Ashoot_YIN_Cshoot_MIN_Ashoot_SRR3050072shoot_SRR3056056shoot_SRR3521411Shoot_A2Shoot_B1Shoot_B3Shoot_C2Shoot_D1Shoot_D3Bud_1Bud_3panicle_early_ERR105069panicle_flowering_ERR10507102.557.51012.51517.52022.52527.53032.53537.540Highcharts.com

7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01266.23DAO75585
PF16901.4DAO_C607743

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycerophospholipid metabolismglycerol-3-phosphate dehydrogenase [EC:1.1.5.3]ko00564K00111

10.Gene Ontology

GO AccessionGO Annotation
GO:0004368glycerol-3-phosphate dehydrogenase activity
GO:0006072glycerol-3-phosphate metabolic process
GO:0009331glycerol-3-phosphate dehydrogenase complex
GO:0016491oxidoreductase activity
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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