PH01000389G0860's details annotation
1.Annotation
ICBR annotation: HOTHEAD precursor, putative, expressed
Blast result AT1G72970 : 0.00E+00
Blast annotation: Glucose-methanol-choline (GMC) oxidoreductase family protein
2.Location
Scaffold: PH01000389
Strand: +
| Region | Start | End |
| gene | 632655 | 645044 |
| mRNA | 632655 | 645044 |
| exon | 632655 | 633901 |
| exon | 634366 | 634453 |
| exon | 634747 | 634814 |
| exon | 635511 | 635628 |
| exon | 635963 | 636117 |
| exon | 636243 | 636373 |
| exon | 636927 | 636998 |
| exon | 638177 | 638232 |
| exon | 638857 | 639211 |
| exon | 641136 | 641449 |
| exon | 641759 | 642147 |
| exon | 642678 | 645044 |
| CDS | 633839 | 633901 |
| CDS | 634366 | 634453 |
| CDS | 634747 | 634814 |
| CDS | 635511 | 635628 |
| CDS | 635963 | 636117 |
| CDS | 636243 | 636373 |
| CDS | 636927 | 636998 |
| CDS | 638177 | 638232 |
| CDS | 638857 | 639211 |
| CDS | 641136 | 641449 |
| CDS | 641759 | 642147 |
| CDS | 642678 | 643286 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000376 | GT77 GlycosylTransferases Valine,_leucine_and_isoleucine_degradation Cutin,_suberine_and_wax_biosynthesis response to biotic stimulus, cellular aldehyde metabolic process, Propanoate_metabolism Tryptophan_metabolism Limonene_and_pinene_degradation Lysine_degradation Chloroalkane_and_chloroalkene_degradation Histidine_metabolism beta-Alanine_metabolism Glycerolipid_metabolism Ascorbate_and_aldarate_metabolism Pentose_and_glucuronate_interconversions Fatty_acid_metabolism |
| coexpression network | CFinderM000385 | Cutin,_suberine_and_wax_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13872.5 | AAA_34 | 133 | 209 |
| PF00732.18 | GMC_oxred_N | 277 | 551 |
| PF05199.12 | GMC_oxred_C | 647 | 793 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| 76 Cutin, suberine and wax biosynthesis | fatty acid omega-hydroxy dehydrogenase [EC:1.1.-.-] | K15403 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.