PH01000390G0370's details annotation
1.Annotation
ICBR annotation: glutathione S-transferase, putative, expressed
Blast result AT2G47730 : 7.40E-41
Blast annotation: glutathione S-transferase phi 8
2.Location
Scaffold: PH01000390
Strand: -
| Region | Start | End |
| gene | 299810 | 301652 |
| mRNA | 299810 | 301652 |
| exon | 299810 | 300490 |
| exon | 300687 | 300735 |
| exon | 300839 | 300981 |
| exon | 301285 | 301333 |
| exon | 301429 | 301652 |
| CDS | 300021 | 300490 |
| CDS | 300687 | 300735 |
| CDS | 300839 | 300981 |
| CDS | 301285 | 301333 |
| CDS | 301429 | 301581 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000004 | RLK-Pelle_LRR-XI-1 (from iTAK) |
| coexpression network | CFinderM000123 | one-carbon metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13417.5 | GST_N_3 | 8 | 82 |
| PF00043.24 | GST_C | 118 | 205 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.