Annotation of co-expression genes

PH01000390G0450's details annotation

1.Annotation

ICBR annotation: ankyrin repeat domain containing protein, expressed

Blast result AT5G66055 : 2.40E-73
Blast annotation: ankyrin repeat protein

2.Location

Scaffold: PH01000390
Strand: -

RegionStartEnd
gene366565370026
mRNA366565370026
exon366565367174
exon367441367539
exon367617367715
exon367940368038
exon368153368251
exon368447368523
exon369254370026
CDS367061367174
CDS367441367539
CDS367617367715
CDS367940368038
CDS368153368251
CDS368447368523
CDS369254369428

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000121proton-transporting ATP synthase complex, catalytic core F(1),
ATP synthesis coupled proton transport,
Terpenoid_backbone_biosynthesis
hydrogen ion transporting ATP synthase activity, rotational mechanism,
transferase activity, transferring alkyl or aryl (other than methyl) groups,
proton-transporting ATPase activity, rotational mechanism,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12796.6Ank_2123214

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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