PH01000390G0530's details annotation
1.Annotation
ICBR annotation: heat shock protein DnaJ, putative, expressed
Blast result AT5G23590 : 2.80E-46
Blast annotation: DNAJ heat shock N-terminal domain-containing protein
2.Location
Scaffold: PH01000390
Strand: -
| Region | Start | End |
| gene | 430595 | 436579 |
| mRNA | 430595 | 436579 |
| exon | 430595 | 431868 |
| exon | 432137 | 432319 |
| exon | 432746 | 432967 |
| exon | 433429 | 436579 |
| CDS | 431842 | 431868 |
| CDS | 432137 | 432319 |
| CDS | 432746 | 432967 |
| CDS | 433429 | 433902 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000876 | GTPase activity, GTP binding, cellulose biosynthetic process, ubiquitin-dependent protein catabolic process, cellulose synthase (UDP-forming) activity, ubiquitin thiolesterase activity, structural molecule activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00226.30 | DnaJ | 12 | 79 |
| PF00076.21 | RRM_1 | 190 | 237 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.