PH01000391G0160's details annotation
1.Annotation
ICBR annotation: OsClp8 - Putative Clp protease homologue, expressed
Blast result AT1G49970 : 4.40E-53
Blast annotation: CLP protease proteolytic subunit 1
2.Location
Scaffold: PH01000391
Strand: -
| Region | Start | End |
| gene | 111065 | 117038 |
| mRNA | 111065 | 117038 |
| exon | 111065 | 111188 |
| exon | 111263 | 111445 |
| exon | 111543 | 111604 |
| exon | 111750 | 111831 |
| exon | 111897 | 111916 |
| exon | 112033 | 112120 |
| exon | 112775 | 112837 |
| exon | 113166 | 113228 |
| exon | 113344 | 113448 |
| exon | 113561 | 113762 |
| exon | 115266 | 115399 |
| exon | 115674 | 115913 |
| exon | 116646 | 117038 |
| CDS | 111087 | 111188 |
| CDS | 111263 | 111445 |
| CDS | 111543 | 111604 |
| CDS | 111750 | 111831 |
| CDS | 111897 | 111916 |
| CDS | 112033 | 112120 |
| CDS | 112775 | 112837 |
| CDS | 113166 | 113228 |
| CDS | 113344 | 113448 |
| CDS | 113561 | 113762 |
| CDS | 115266 | 115399 |
| CDS | 115674 | 115913 |
| CDS | 116646 | 116657 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000633 | Aminoacyl-tRNA_biosynthesis histone_lysine_methylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00574.22 | CLP_protease | 180 | 229 |
| PF00574.22 | CLP_protease | 307 | 409 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004252 | serine-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.