PH01000391G0510's details annotation
1.Annotation
ICBR annotation: sodium/calcium exchanger protein, putative, expressed
Blast result AT2G38170 : 2.00E-127
Blast annotation: cation exchanger 1
2.Location
Scaffold: PH01000391
Strand: -
| Region | Start | End |
| gene | 382057 | 387770 |
| mRNA | 382057 | 387770 |
| exon | 382057 | 382490 |
| exon | 382581 | 382671 |
| exon | 383068 | 383127 |
| exon | 383395 | 383511 |
| exon | 383699 | 383815 |
| exon | 383916 | 384047 |
| exon | 384140 | 384361 |
| exon | 384461 | 384657 |
| exon | 384741 | 384769 |
| exon | 384869 | 384936 |
| exon | 387339 | 387770 |
| CDS | 382435 | 382490 |
| CDS | 382581 | 382671 |
| CDS | 383068 | 383127 |
| CDS | 383395 | 383511 |
| CDS | 383699 | 383815 |
| CDS | 383916 | 384047 |
| CDS | 384140 | 384361 |
| CDS | 384461 | 384657 |
| CDS | 384741 | 384769 |
| CDS | 384869 | 384936 |
| CDS | 387339 | 387593 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01699.23 | Na_Ca_ex | 87 | 247 |
| PF01699.23 | Na_Ca_ex | 279 | 421 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006812 | cation transport |
| GO:0006816 | calcium ion transport |
| GO:0008324 | cation transmembrane transporter activity |
| GO:0015369 | calcium:hydrogen antiporter activity |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.