Annotation of co-expression genes

PH01000391G0610's details annotation

1.Annotation

ICBR annotation: universal stress protein domain containing protein, putative, expressed

Blast result AT1G68300 : 3.80E-30
Blast annotation: Adenine nucleotide alpha hydrolases-like superfamily protein

2.Location

Scaffold: PH01000391
Strand: +

RegionStartEnd
gene445144447280
mRNA445144447280
exon445144446385
exon446508446617
exon446770446888
exon447228447280
CDS446172446385
CDS446508446617
CDS446770446888
CDS447228447231

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000776oxidation-reduction process,
6-phosphofructokinase complex,
Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis
Polycyclic_aromatic_hydrocarbon_degradation
Aminobenzoate_degradation
Bisphenol_degradation
Limonene_and_pinene_degradation
iron ion binding,
heme binding,
electron carrier activity,
glucose-6-phosphate dehydrogenase activity,
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,
glucose metabolic process,
6-phosphofructokinase activity,
cofactor binding,
Pentose_phosphate_pathway
Fructose_and_mannose_metabolism
NADP binding,
NAD binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00582.25Usp1145

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006950response to stress

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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