PH01000393G0200's details annotation
1.Annotation
ICBR annotation: zinc finger protein, putative, expressed
Blast result AT3G56590 : 7.70E-58
Blast annotation: hydroxyproline-rich glycoprotein family protein
2.Location
Scaffold: PH01000393
Strand: -
| Region | Start | End |
| gene | 122801 | 127472 |
| mRNA | 122801 | 127472 |
| exon | 122801 | 123013 |
| exon | 123217 | 123235 |
| exon | 123553 | 124255 |
| exon | 125015 | 125383 |
| exon | 125472 | 125581 |
| exon | 126594 | 127472 |
| CDS | 122914 | 123013 |
| CDS | 123217 | 123235 |
| CDS | 123553 | 124255 |
| CDS | 125015 | 125383 |
| CDS | 125472 | 125581 |
| CDS | 126594 | 126834 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.