PH01000393G0310's details annotation
1.Annotation
ICBR annotation: S-formylglutathione hydrolase, putative, expressed
Blast result AT2G41530 : 7.00E-126
Blast annotation: S-formylglutathione hydrolase
2.Location
Scaffold: PH01000393
Strand: +
| Region | Start | End |
| gene | 204088 | 215965 |
| mRNA | 204088 | 215965 |
| exon | 204088 | 204399 |
| exon | 204480 | 204597 |
| exon | 207817 | 207929 |
| exon | 208844 | 209083 |
| exon | 209226 | 209360 |
| exon | 209912 | 210023 |
| exon | 210158 | 210231 |
| exon | 210390 | 210692 |
| exon | 210861 | 211053 |
| exon | 211430 | 211477 |
| exon | 212548 | 212920 |
| exon | 213062 | 213138 |
| exon | 213969 | 214096 |
| exon | 214320 | 214418 |
| exon | 214507 | 214572 |
| exon | 215010 | 215096 |
| exon | 215627 | 215965 |
| CDS | 204238 | 204399 |
| CDS | 204480 | 204597 |
| CDS | 207817 | 207929 |
| CDS | 208844 | 209083 |
| CDS | 209226 | 209360 |
| CDS | 209912 | 210023 |
| CDS | 210158 | 210231 |
| CDS | 210390 | 210692 |
| CDS | 210861 | 211053 |
| CDS | 211430 | 211477 |
| CDS | 212548 | 212920 |
| CDS | 213062 | 213138 |
| CDS | 213969 | 214096 |
| CDS | 214320 | 214418 |
| CDS | 214507 | 214572 |
| CDS | 215010 | 215096 |
| CDS | 215627 | 215809 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00756.19 | Esterase | 32 | 281 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Methane metabolism | S-formylglutathione hydrolase [EC:3.1.2.12] | ko00680 | K01070 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004091 | carboxylesterase activity |
| GO:0018738 | S-formylglutathione hydrolase activity |
| GO:0046294 | formaldehyde catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.