Annotation of co-expression genes

PH01000394G0180's details annotation

1.Annotation

ICBR annotation: polyadenylate-binding protein, putative, expressed

Blast result AT1G49760 : 0
Blast annotation: poly(A) binding protein 8

2.Location

Scaffold: PH01000394
Strand: -

RegionStartEnd
gene166174175816
mRNA166174175816
exon166174167267
exon167356167568
exon167662167832
exon169917170054
exon170395170484
exon171557171613
exon171700171777
exon171858172517
exon172602172720
exon174470175816
CDS167022167267
CDS167356167568
CDS167662167832
CDS169917170054
CDS170395170484
CDS171557171613
CDS171700171777
CDS171858172517
CDS172602172720
CDS174470174740

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000554EIL Transcription_Regulator(from PlantTFDB)
GT20 GlycosylTransferases
STE_STE11 (from iTAK)
PHD Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_139109
PF00076.21RRM_1127195
PF00076.21RRM_1218286
PF00076.21RRM_1321389
PF00658.17PABP587653

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
RNA transportpolyadenylate-binding proteinko03013K13126
mRNA surveillance pathwaypolyadenylate-binding proteinko03015K13126
RNA degradationpolyadenylate-binding proteinko03018K13126

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0003723RNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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