PH01000395G0710's details annotation
1.Annotation
ICBR annotation: wibg, putative, expressed
Blast result AT1G11400 : 2.20E-27
Blast annotation: partner of Y14-MAGO
2.Location
Scaffold: PH01000395
Strand: +
| Region | Start | End |
| gene | 505441 | 511717 |
| mRNA | 505441 | 511717 |
| exon | 505441 | 505971 |
| exon | 506089 | 506199 |
| exon | 509832 | 510083 |
| exon | 510423 | 511717 |
| CDS | 505783 | 505971 |
| CDS | 506089 | 506199 |
| CDS | 509832 | 510083 |
| CDS | 510423 | 510557 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09282.9 | Mago-bind | 24 | 50 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | partner of Y14 and mago | ko03013 | K14294 |
| mRNA surveillance pathway | partner of Y14 and mago | ko03015 | K14294 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.