PH01000395G0760's details annotation
1.Annotation
ICBR annotation: AT hook motif family protein, expressed
Blast result AT1G77620 : 3.90E-40
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01000395
Strand: -
| Region | Start | End |
| gene | 544491 | 555912 |
| mRNA | 544491 | 555912 |
| exon | 544491 | 544840 |
| exon | 545542 | 545624 |
| exon | 546650 | 546709 |
| exon | 547747 | 547944 |
| exon | 548145 | 548202 |
| exon | 550315 | 550457 |
| exon | 550573 | 550830 |
| exon | 550936 | 551103 |
| exon | 552088 | 552287 |
| exon | 552801 | 552938 |
| exon | 553104 | 553167 |
| exon | 554377 | 555912 |
| CDS | 544684 | 544840 |
| CDS | 545542 | 545624 |
| CDS | 546650 | 546709 |
| CDS | 547747 | 547944 |
| CDS | 548145 | 548202 |
| CDS | 550315 | 550457 |
| CDS | 550573 | 550830 |
| CDS | 550936 | 551103 |
| CDS | 552088 | 552287 |
| CDS | 552801 | 552938 |
| CDS | 553104 | 553167 |
| CDS | 554377 | 554676 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03215.14 | Rad17 | 432 | 545 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0006281 | DNA repair |
| GO:0007049 | cell cycle |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.