Annotation of co-expression genes

PH01000402G0910's details annotation

1.Annotation

ICBR annotation: OsSub4 - Putative Subtilisin homologue, expressed

Blast result AT5G44530 : 0.00E+00
Blast annotation: Subtilase family protein

2.Location

Scaffold: PH01000402
Strand: -

RegionStartEnd
gene582059590559
mRNA582059590559
exon582059583581
exon584128584409
exon585028585298
exon585478585809
exon585898586180
exon586463586535
exon587393587488
exon588076588473
exon588876589029
exon590066590559
CDS583169583581
CDS584128584409
CDS585028585298
CDS585478585809
CDS585898586180
CDS586463586535
CDS587393587488
CDS588076588473
CDS588876589029
CDS590066590304

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000168RLK-Pelle_LRR-III (from iTAK)
protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
RLK-Pelle_LRR-I-2 (from iTAK)
ATP binding,
identical protein binding,
negative regulation of catalytic activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05922.15Inhibitor_I934153
PF00082.21Peptidase_S8178669

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004252serine-type endopeptidase activity
GO:0006508proteolysis
GO:0042802identical protein binding
GO:0043086negative regulation of catalytic activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.