PH01000403G0460's details annotation
1.Annotation
ICBR annotation: interferon-related developmental regulator, putative, expressed
Blast result AT1G27760 : 5.10E-77
Blast annotation: interferon-related developmental regulator family protein / IFRD protein family
2.Location
Scaffold: PH01000403
Strand: -
| Region | Start | End |
| gene | 315025 | 323992 |
| mRNA | 315025 | 323992 |
| exon | 315025 | 315579 |
| exon | 316246 | 316314 |
| exon | 317957 | 318028 |
| exon | 318259 | 318342 |
| exon | 318423 | 318729 |
| exon | 318819 | 318931 |
| exon | 319032 | 319142 |
| exon | 319229 | 319344 |
| exon | 319435 | 319517 |
| exon | 319864 | 319944 |
| exon | 321392 | 321599 |
| exon | 322620 | 323992 |
| CDS | 315409 | 315579 |
| CDS | 316246 | 316314 |
| CDS | 317957 | 318028 |
| CDS | 318259 | 318342 |
| CDS | 318423 | 318729 |
| CDS | 318819 | 318931 |
| CDS | 319032 | 319142 |
| CDS | 319229 | 319344 |
| CDS | 319435 | 319517 |
| CDS | 319864 | 319944 |
| CDS | 321392 | 321599 |
| CDS | 322620 | 322686 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05004.12 | IFRD | 51 | 361 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.